Following the directions, I have 44 users who have registered and logged in with Bentley Connect and are displayed in the User Management portion of the website. However, I continue to get angry correspondence that doom is a upon us as we have not successfully registered any users.
One such email listed logins based on machine ID and machine name. We didn't register that way. Are there steps missing from the Bentley_User_Registration_Administrators_Resource_Guide.pdf?
So the new and improved scheme appears to be working! To others who are not actively using Bentley, open licensemanager.exe and manually send the logs.