Cut out area of ​​finished production and replace

I have a production of aerial photography (about 2,500) and ground shots (about 15,000)

these are divided into many tiles.

Since I expect some errors, I would like to cut out individual areas after the complete production and recalculate and reinsert separately.

Can I work in CC (or other programs)?

1, cut out precisely defined areas after production

2, reinstate newly calculated areas Maybe that's about Reconstruction/Retouching?

If you use the exact area of ​​a tile (where are the coordinates and in which coordinate system) as the boundary for a new production.

And then copied to the folder for the Reconstruction.

For tips and quick answers, I already thank you very much

Christian