Persistent Topology Creation

I wanna create Topology of my DGN resident XFM features. I created features in GSA, aded Layer in PersistentTopology and added features to layer. I opened Map Standalone, draw some lines, put centroids and created shapes (polygon features defined in GSA) with Create Shapes tool which is in Topology Creation Toolbox. I tried PTOPO MODIFY command and all my lines and polygons from same topology layer are moved with the exception of group holes. Then I tried PTOPO SPLIT and PTOPO MERGE commands and I got error: Command not defined for this application. I tried this in Map Standalon SS3 and Map Standalone SS4.

Am I doing something wrong in my workflow?