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Bentley Map V8i (SELECTseries 4) doesn't appear to honor the Use color table preference for references.
Locate ans open ...\config\appl\msgeo.cfg
Navigate to Line 386 and comment out MS_REFCOLORTABLE = 2.
This is done by preceding the line with a #.
This ensures the variable is not read and is therefore undefined.
When undefined, Bentley Map will honour the Use Color Table preference.
Source:
http://communities.bentley.com/products/geospatial/desktop/f/5924/t/126816#pi20068filter=all&pi20068scroll=false