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To create a new Master Template, start by setting up a normal log template. Select the page size and the header and footer sizes as normal. Once you have a blank template you can create the header and footer you require for your template as normal using all the normal functionality of Template Studio. When it comes to creating the depth related areas you will need to add a depth column by going to the depth columns on the top ribbon.
If you want the hole depth area to be part of the strip set just add one column.
If you would like to have some standard columns, for example the scale, you can set these up as normal along with the depth related strip sets.
Once you have your column you can change the name by selecting the Strip Set Column box towards the bottom of the dialog.
This will make the columns you have selected for the area for the strip sets to be shown. Its always a good idea to select the expand the fill available space button as well to save time on resizing the space.
Once this is set up all you to do is create the strips which you will want to come across into the depth related area.