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Conduit slope set to zero

Hello,

I have a scenario that has 2 above grounds basins both that have the same bottom surface elevation. Basin A is the "upstream" basin, while Basin B  is the "Downstream" basin. Flow from basin A goes into Basin B through a pipe that has zero slope (Conduit CO-1, refer to below screenshot), basically acting as additional storage for the routing, or so that's my thought. Basin B has an overflow structure which is used to discharge all of the project flow rates to my point of compliance.

Here's where i need help. I'm trying to understand the results of the analysis. Intuitively, the pipe acts as a culvert or orifice and the flow direction in the pipe will depend on the headwater of each respective basin. If the upstream basin HGL is higher then the HGL of the downstream basin, that tells me that there's positive flow. If the opposite occurs at a certain time step, then its negative flow. The results of my analysis does now show that and i'd like to understand why. Additionally, i'd like to understand how the flow is determined for the conduit in this situation. 

The below snippet shows the time step at 0.43 hrs, which Basin A HGL at 1267.55' and Basin B at 1267.47'. This would tell me that there is positive flow, and the direction of flow is going down the way i'd expect it to, but instead, the calculations suggest the flow is negative and its going upstream. 

If anyone could help me with understanding this, i'd really appreciate it. 

Thank you,