Refreshing references shows inactive levels and rasters

Background info: Powerdraft CE10 / Win 10 Pro, no workset

In some of my projects a simple reload/refresh of the references does not only refresh but also show all levels and a couple of rasters that have been switched off for quite a while, regardless if I had already saved the settings. I have to close and open the file again to get the view I wanted. This only happens when I edited the reference and then hit reload.

Is there any setting that I'm missing? Due to project/file size I can't share these to Bentley but it's a common phenomenon here.