Merge reference file-levels

I seem to have lost all control of levels when I merge a file that is referenced. I either get all on Default level or it prepends all the level names with the name of the reference file. I want them to retain the level name, but it feels like AutoCad (boo).

I'm using User Preference should below, am I missing something else? This seems to to u14.

0474.gis.dxf4377.Site.dgn

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