Print Organizer Issue w/ Layers

I am having issues doing a batch plot in MS using a customer's title block.  They have their title block attached as a reference dgn.  The company has several "sub companies" and uses the same title block dgn file for each one, having a separate layer for each of the sub companies name/logo in the dgn file.  When creating a drawing, we turn off all the layers for the other sub companies except for the one that the drawing is associated with.

I am now having an issue where MS is turning off the company layer that I had turned on and turning on another company layer.

I tried taking the title block file and deleting the other company layers and only having the one that I need remaining.  This resulted in the batch plot printing the drawing with a blank spot where the company logo would be.

I've used Print Organizer in the past to print drawings for this customer with no issue.

Thanks in advance!!