Member end forces , applied load or reaction?

This may be a little hard to explain, but I will give it a try.  In the 'GLOBAL FORCE AND MOMENT' output section,  loads are printed for each node twice.  These loads, unless they are a tee, are identical or nearly identical in both load sets (including having the same sign) for static load cases.  One should be positive and one should be negative (one is the applied force, one is the reaction).  Is there guidance anywhere on which should be positive or negative (probably related to the order in the deck).

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