Is there anyway to setup a template to run reports? Or do you have to go into each module and print each report separately?
Regretfully, you will need to go into each module and print each report separately. Enhancement #153232 includes a request for global reporting options from RAM Manager. I have linked this question with that request.
You could use RAM DataAccess to create custom reports of program input and output. The web page below discusses RAM DataAccess if you are interested in learning more:
http://communities.bentley.com/products/structural/structural_analysis___design/w/structural_analysis_and_design__wiki/4418.what-is-ram-dataaccess-tn