RAM Structural System Diaphragms and Lateral Loading

Currently my 3 story RAM structural system model is calculating loads differently for each story when the roof diaphragm is switched from pseudo flexible to semi rigid.  Additionally, when the roof diaphragm is semi-rigid, the load is applied to the perimeter of the building vs around the central CMU shear walls when the roof diaphragm is pseudo flexible. Is this correct or is there a way to fix this? Thanks!