Element template point not always or consistently displaying in cross sections

This is happening on the latest 2 versions of SS4.

In our cross sections, we are having the point ('X') disappear which compromises our ability to annotate. It is not all points in the cross section and often a cross section will display one point but not another that is using the same element template.

Not using clipping references seems to help for the most part but still having issues. Limiting use of "Transitions" between templates seems to have a similar response. We are trying to limit use of both "Clipping References" and "Transitions" as much as possible since they seem to cause these issues as well as drastically slow corridor processing down.

Is anyone else having similar issues? Any fixes or work arounds? It is not practical for our designers to have such issues when the need to annotate.