Bentley configuration explorer doesn't show organization-civil cfg

I'm using the Bentley configuration explorer to set up a new OpenRoads config for our organization.

In this example I've configured a workspace "IB" and added  the variable

CIVIL_ORGANIZATION_NAME = NLCS

and further on the Bentley config variables are included

%if exists ($(CIVIL_ORGANIZATION_ROOT)$(CIVIL_ORGANIZATION_NAME).cfg)
% include $(CIVIL_ORGANIZATION_ROOT)$(CIVIL_ORGANIZATION_NAME).cfg

When I start OpenRoads in this way both IB workspace and the NLCS Organization-Civil cfg's (where most of our stuff is located) are loaded. Everything works as it should.

But when I run the same config with the Bentley Configuration Explorer the Workspace level gets loaded but not the Organization-Civil?

It looks like the configuration explorer is not able to load the Organization-Civil level from the workspace level? Anyone any thoughts?