Cross Section Named Boundary Annotation

I made some changes to an alignment and when I went back to the cross section named boundaries, all the annotation was off when reannotating them. It seems to be that they are annotating the wrong cross section in each XS cut. A cross section is annotated with slopes and elevations for one that is 2000' down the alignment. Has anyone ever experienced this before? Is there a way to someone resync the named boundaries to the new adjusted alignment? It was shortened and a PI was taken out.